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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34448892_34453297_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34448892 - 34453297
Intron Length:
4406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCGA
5'SS Class:
major
3'SS Sequence:
TCTTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TGAATATAAACC
Flanking Amino Acid:
KLFDNLLALIRTHNNLYMPE
Intron Amino Acid Position:
776

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
65
42.7
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
86.1
0.81
0.8
84.1
30.8
Minor 5ss
26.7
-2.7
2.9
32.1
42.4
Minor BPS
46.7
-0.2
1.9
57.81
40.3

Associated Gene:

Gene:
XPO5
Ensembl Gene ID:
ENSAPLG00000001469
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040854
34433661 - 34456945
23285
ENSAPLT00000002022
34433661 - 34456945
23285