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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34455615_34455973_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34455615 - 34455973
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAC
U12 Branch Point Sequence:
CCCACCAAAACC
Flanking Amino Acid:
WQVINQRSMLCEDDAADDNP
Intron Amino Acid Position:
936

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.5
38.5
Major BPS
62.4
0.31
1.2
72.4
34.6
Major PPT
79
0.65
0.8
77.1
31.6
Minor 5ss
40.8
-1
2.8
50.5
40
Minor BPS
45
-0.4
2
51.53
45.6

Associated Gene:

Gene:
XPO5
Ensembl Gene ID:
ENSAPLG00000001469
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040854
34433661 - 34456945
23285
ENSAPLT00000002022
34433661 - 34456945
23285