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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34461784_34461957_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34461784 - 34461957
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
TCATCCTTAACT
Flanking Amino Acid:
DVLMHCVKGIGKDHAKFSPV
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
74.5
0.55
1
69.1
41.3
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
87.9
1.27
1
93.01
35.4

Associated Gene:

Gene:
POLR1C
Ensembl Gene ID:
ENSAPLG00000002908
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002963
34460851 - 34463522
2672