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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34462111_34462323_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34462111 - 34462323
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
CTTCTCTTCACA
Flanking Amino Acid:
DPNELYFNHKVYSKHMTWVP
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98
1.13
0.6
93.1
14.6
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
84.3
0.77
0.7
79.3
26.3
Minor 5ss
41.9
-0.9
2.9
57.8
46.8
Minor BPS
60.8
0.33
1.8
72.02
40.3

Associated Gene:

Gene:
POLR1C
Ensembl Gene ID:
ENSAPLG00000002908
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002963
34460851 - 34463522
2672