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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34462444_34462562_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34462444 - 34462562
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
TCTGCAAAGACT
Flanking Amino Acid:
DPRLFEYRNQGDEEGTEIDT
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
80
0.67
0.7
72.2
32.4
Minor 5ss
31.1
-2.2
3.2
41.7
45
Minor BPS
42.9
-0.4
2.2
65.06
45.5

Associated Gene:

Gene:
POLR1C
Ensembl Gene ID:
ENSAPLG00000002908
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002963
34460851 - 34463522
2672