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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34463801_34463878_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
34463801 - 34463878
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTACC
5'SS Class:
strong_major
3'SS Sequence:
GGCTCGGCCTCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
CGGGGCTGACGC
Flanking Amino Acid:
EWGGFEDNMQGGGSAVIDME
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.9
35.3
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
59
0.2
1
53.6
41.5
Minor 5ss
30.2
-2.3
2.9
36.9
40.4
Minor BPS
33.8
-1.2
2.1
34.8
41.5

Associated Gene:

Gene:
YIPF3
Ensembl Gene ID:
ENSAPLG00000003089
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003168
34463702 - 34467689
3988