About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34464866_34465258_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34464866 - 34465258
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CTGACCAAACCT
Flanking Amino Acid:
IPVKMINFPQKIAGELYGPL
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
23.3
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
79.4
0.66
0.7
74.3
24
Minor 5ss
37.4
-1.4
2.9
50.4
46
Minor BPS
42.8
-0.4
2.2
61.11
48.2

Associated Gene:

Gene:
YIPF3
Ensembl Gene ID:
ENSAPLG00000003089
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003168
34463702 - 34467689
3988