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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34465824_34466074_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34465824 - 34466074
Intron Length:
251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTATG
5'SS Class:
major
3'SS Sequence:
TTTGTTTTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ACGTTTATAATG
Flanking Amino Acid:
ITMVQMLSLLGYGLFGHCIT
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.7
41.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
83.6
0.76
0.9
84.6
36
Minor 5ss
38.4
-1.3
3
47.6
42.5
Minor BPS
48.2
-0.2
1.6
49.36
39.5

Associated Gene:

Gene:
YIPF3
Ensembl Gene ID:
ENSAPLG00000003089
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003168
34463702 - 34467689
3988