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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34470939_34471606_R

Intron Information:

Intron Rank:
152030
Intron Class:
major
Intron Phase:
Intron Coordinates:
34470939 - 34471606
Intron Length:
668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGGGG
5'SS Class:
major
3'SS Sequence:
TCCTGTTGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
CTATCTACATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
53.3
43.7
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
72.3
0.5
0.9
67.8
37.8
Minor 5ss
34.8
-1.7
3.5
46.9
48.5
Minor BPS
41.7
-0.5
2
59.31
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029365
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029557
34469453 - 34471944
2492