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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34531311_34531620_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34531311 - 34531620
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
CCTCTGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCAGAA
U12 Branch Point Sequence:
ACCCCACGAGCT
Flanking Amino Acid:
DSRLVGLEELRSRLAIIPQD
Intron Amino Acid Position:
1350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
49.9
-0
1.1
46.7
38.9
Major PPT
78.9
0.65
0.8
72.2
32.4
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
37.6
-0.8
2
51.1
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003561
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021181
34529670 - 34543299
13630
ENSAPLT00000003667
34529670 - 34541851
12182