Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34531875_34532161_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34531875 - 34532161

Intron Length:

287

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAGCT

5'SS Class:

strong_major

3'SS Sequence:

TTGTCCCCCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACAGAA

U12 Branch Point Sequence:

AGAACTGAGACT

Flanking Amino Acid:

PVEPQDKVVQVAADWPSRGL

Intron Amino Acid Position:

1266

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

74.9

33.2

Major BPS

49.3

-0

0.9

44.7

28.3

Major PPT

72.7

0.51

0.8

70.8

30.3

Minor 5ss

32.4

-2

3.5

48.3

47.4

Minor BPS

40.6

-0.6

2.2

55.13

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003561

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021181

34529670 - 34543299

13630

ENSAPLT00000003667

34529670 - 34541851

12182