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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34534550_34534942_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34534550 - 34534942
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTACC
5'SS Class:
major
3'SS Sequence:
TCTATCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TTGCACTGACCT
Flanking Amino Acid:
KDVDKRQKDKAPDEQSQEED
Intron Amino Acid Position:
927

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.3
71.5
38.6
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
75.7
0.58
0.8
69.1
31.4
Minor 5ss
38.5
-1.3
2.4
47
41.3
Minor BPS
48.8
-0
1.9
71.62
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003561
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021181
34529670 - 34543299
13630