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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34534550_34535390_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34534550 - 34535390
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTGG
5'SS Class:
major
3'SS Sequence:
TCTATCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TTGCACTGACCT
Flanking Amino Acid:
LMDNGRIVKTAPDEQSQEED
Intron Amino Acid Position:
866

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
54.8
44.8
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
75.7
0.58
0.8
69.1
31.4
Minor 5ss
34.4
-1.8
3.5
46.9
48.5
Minor BPS
48.8
-0
1.9
71.62
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003561
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003667
34529670 - 34541851
12182