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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34535021_34535390_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34535021 - 34535390
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTGG
5'SS Class:
major
3'SS Sequence:
TCTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
AGTCTCTGAAGC
Flanking Amino Acid:
LMDNGRIVKTGPPADILPLV
Intron Amino Acid Position:
901

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
54.8
44.8
Major BPS
69.8
0.49
1
61
37.5
Major PPT
88.8
0.87
0.6
84
23.9
Minor 5ss
34.4
-1.8
3.5
46.9
48.5
Minor BPS
49.2
-0
1.7
59.84
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003561
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021181
34529670 - 34543299
13630