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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34537988_34538193_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34537988 - 34538193
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CAGCCTCCAATT
Flanking Amino Acid:
LLGHQLTATKVFTALALVGM
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
80.6
0.69
0.9
76.3
37.7
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
43.9
-0.3
1.8
55.39
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003561
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021181
34529670 - 34543299
13630
ENSAPLT00000003667
34529670 - 34541851
12182