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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34548420_34553234_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34548420 - 34553234
Intron Length:
4815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCAATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
CTTTCTTCAATT
Flanking Amino Acid:
GSEHGDGSGRRRSPSLRSES
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.2
39.5
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
79.8
0.67
0.9
72.6
36.3
Minor 5ss
30.2
-2.3
2.6
28.5
36
Minor BPS
70.2
0.71
1.5
83.73
37.9

Associated Gene:

Gene:
ZNF318
Ensembl Gene ID:
ENSAPLG00000004126
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004241
34516134 - 34573526
57393