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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34567141_34567615_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
34567141 - 34567615
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGGC
5'SS Class:
strong_major
3'SS Sequence:
ACTGTGCAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
ACCTCTGTCACT
Flanking Amino Acid:
THMHNKKHRQTLDPYNRPWA
Intron Amino Acid Position:
1208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
72.3
37.8
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
53.9
0.09
1
48.2
39.1
Minor 5ss
39.1
-1.2
3.1
52.5
44.7
Minor BPS
46.2
-0.2
2.3
65.07
46.1

Associated Gene:

Gene:
ZNF318
Ensembl Gene ID:
ENSAPLG00000004126
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004241
34516134 - 34573526
57393