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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34567716_34568827_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34567716 - 34568827
Intron Length:
1112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCGGCCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
GTTTCTCTGATT
Flanking Amino Acid:
RIDKITVPAKGSEFLIPITG
Intron Amino Acid Position:
1241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
74.8
0.62
1
67
39.8
Major PPT
74.8
0.56
0.9
65.2
41.1
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
62.1
0.46
1.6
80.42
35.4

Associated Gene:

Gene:
ZNF318
Ensembl Gene ID:
ENSAPLG00000004126
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004241
34516134 - 34573526
57393