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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34586002_34588357_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34586002 - 34588357
Intron Length:
2356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTCTCACCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTTTCTCACCC
Flanking Amino Acid:
LNQKNCLLLLTYLISELEAA
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
78.7
0.65
0.8
70.8
34.7
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
62.9
0.38
1.8
78.1
37.8

Associated Gene:

Gene:
FAM98A
Ensembl Gene ID:
ENSAPLG00000012120
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012642
34581657 - 34596422
14766
ENSAPLT00000031388
34578562 - 34596422
17861