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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34608014_34611427_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34608014 - 34611427
Intron Length:
3414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GATTCCTTGACG
Flanking Amino Acid:
PTFCEHCAGFLWGIIKQGYK
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
92.4
0.95
0.6
88.1
21.7
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
76
0.67
1.3
72.78
39.6

Associated Gene:

Gene:
RASGRP3
Ensembl Gene ID:
ENSAPLG00000012309
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030192
34604240 - 34658203
53964
ENSAPLT00000012880
34604240 - 34656325
52086
ENSAPLT00000045998
34604240 - 34658203
53964