About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34611576_34612858_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34611576 - 34612858
Intron Length:
1283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TTTTTCCTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACAGAT
U12 Branch Point Sequence:
TTTTTCCTAACA
Flanking Amino Acid:
LDSFCVLDKDQDGLISKEEM
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
72.9
39.3
Major BPS
49.4
-0
1.2
46.7
38.9
Major PPT
85.3
0.79
0.8
81.8
28.7
Minor 5ss
46
-0.4
2.8
63.9
41.4
Minor BPS
75.9
0.81
1.6
87.87
29.2

Associated Gene:

Gene:
RASGRP3
Ensembl Gene ID:
ENSAPLG00000012309
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045998
34604240 - 34658203
53964
ENSAPLT00000030192
34604240 - 34658203
53964
ENSAPLT00000012880
34604240 - 34656325
52086