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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34612975_34615835_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34612975 - 34615835
Intron Length:
2861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
TTATGACAAACA
Flanking Amino Acid:
INKHIRKLVDSVFRNYDHDH
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.2
90.9
28.7
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
43
-0.8
2.9
59.7
38
Minor BPS
42.3
-0.5
2.4
62.22
43.5

Associated Gene:

Gene:
RASGRP3
Ensembl Gene ID:
ENSAPLG00000012309
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012880
34604240 - 34656325
52086
ENSAPLT00000045998
34604240 - 34658203
53964
ENSAPLT00000030192
34604240 - 34658203
53964