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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34625458_34625617_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34625458 - 34625617
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
VITKFINVAQKLLHLQNFNT
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86.9
30.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80
0.68
0.8
74
30.4
Minor 5ss
34.7
-1.7
3.1
49.5
46.7
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
RASGRP3
Ensembl Gene ID:
ENSAPLG00000012309
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045998
34604240 - 34658203
53964
ENSAPLT00000030192
34604240 - 34658203
53964
ENSAPLT00000012880
34604240 - 34656325
52086