About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34625792_34628083_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34625792 - 34628083
Intron Length:
2292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGAAGC
5'SS Class:
major
3'SS Sequence:
TTTCTTCTGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTTACTGAAAA
Flanking Amino Acid:
LEHKSFRRISFTDYQSYVIH
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
63.2
41.4
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
79.8
0.67
0.9
81.5
30.6
Minor 5ss
36.7
-1.5
3.1
54
42.9
Minor BPS
64.3
0.44
1.7
79.27
36

Associated Gene:

Gene:
RASGRP3
Ensembl Gene ID:
ENSAPLG00000012309
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030192
34604240 - 34658203
53964
ENSAPLT00000012880
34604240 - 34656325
52086
ENSAPLT00000045998
34604240 - 34658203
53964