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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34628232_34629531_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34628232 - 34629531
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGGATG
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
GTGTGCTTATTT
Flanking Amino Acid:
DHIHLIDISSIPSYDWMRRV
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
75.5
40.2
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
89
0.88
0.8
84.5
30.4
Minor 5ss
38.3
-1.3
3.3
53.3
43.9
Minor BPS
53.1
0.17
2
72.26
45.1

Associated Gene:

Gene:
RASGRP3
Ensembl Gene ID:
ENSAPLG00000012309
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045998
34604240 - 34658203
53964
ENSAPLT00000030192
34604240 - 34658203
53964
ENSAPLT00000012880
34604240 - 34656325
52086