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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34629664_34630368_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34629664 - 34630368
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TTTCTGTTGATT
Flanking Amino Acid:
EFRLKICYFMRYWILEFPAE
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
77.2
0.61
1
73.8
40.5
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
55.6
0.26
2.1
79.75
36.6

Associated Gene:

Gene:
RASGRP3
Ensembl Gene ID:
ENSAPLG00000012309
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045998
34604240 - 34658203
53964
ENSAPLT00000030192
34604240 - 34658203
53964
ENSAPLT00000012880
34604240 - 34656325
52086