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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34631104_34632445_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34631104 - 34632445
Intron Length:
1342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGAGTT
5'SS Class:
major
3'SS Sequence:
TGCTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTGTTCATGACT
Flanking Amino Acid:
ELLNACIEMFDDKGNQCSSH
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
71.6
38.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
85.1
0.79
0.8
80.1
31.9
Minor 5ss
35.1
-1.7
3.8
52.1
46.1
Minor BPS
59.1
0.37
1.7
75.3
41.8

Associated Gene:

Gene:
RASGRP3
Ensembl Gene ID:
ENSAPLG00000012309
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012880
34604240 - 34656325
52086
ENSAPLT00000045998
34604240 - 34658203
53964
ENSAPLT00000030192
34604240 - 34658203
53964