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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34632640_34657744_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
34632640 - 34657744
Intron Length:
25105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTCTTTTACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97
1.11
0.7
88.7
23.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
87.4
0.84
0.8
81.3
35.4
Minor 5ss
37.2
-1.4
3.3
52
45.2
Minor BPS
75.8
0.89
1.5
90.35
33.1

Associated Gene:

Gene:
RASGRP3
Ensembl Gene ID:
ENSAPLG00000012309
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030192
34604240 - 34658203
53964