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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34695806_34697165_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34695806 - 34697165
Intron Length:
1360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTCTGAACAGCA
Flanking Amino Acid:
EIFPCPVFGTAEFTDLCPEG
Intron Amino Acid Position:
994

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
67.9
37.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
76.2
0.59
0.7
69
31.5
Minor 5ss
29.9
-2.3
3.3
35.5
43.1
Minor BPS
37.3
-0.9
2.3
53.87
44.2

Associated Gene:

Gene:
LTBP1
Ensembl Gene ID:
ENSAPLG00000012621
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034958
34673080 - 34805375
132296
ENSAPLT00000013254
34673080 - 34805375
132296