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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34697337_34704061_R

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
34697337 - 34704061
Intron Length:
6725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAC
5'SS Class:
strong_major
3'SS Sequence:
GAATTGCCAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
TCTTTTAGAATT
Flanking Amino Acid:
TGQCRFRTSPEADQHEDGKK
Intron Amino Acid Position:
920

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.5
29.8
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
54.9
0.11
1
48.4
40
Minor 5ss
37.6
-1.4
3.2
49.9
46.6
Minor BPS
52
0.14
1.7
72.82
38.7

Associated Gene:

Gene:
LTBP1
Ensembl Gene ID:
ENSAPLG00000012621
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034958
34673080 - 34805375
132296