Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34697349_34704061_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34697349 - 34704061

Intron Length:

6713

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATAC

5'SS Class:

strong_major

3'SS Sequence:

TATTGTCTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

GTTATCTTACAT

Flanking Amino Acid:

TGQCRFRTSPELPIEADQHE

Intron Amino Acid Position:

933

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

74.5

29.8

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

80.4

0.68

0.8

78.1

Minor 5ss

37.6

-1.4

3.2

49.9

46.6

Minor BPS

55.5

0.25

1.8

74.52

41.9

Associated Gene:

Gene:

LTBP1

Ensembl Gene ID:

ENSAPLG00000012621

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013254

34673080 - 34805375

132296