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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34704206_34706530_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34704206 - 34706530
Intron Length:
2325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGAAT
U12 Branch Point Sequence:
TGGGTCTGAATC
Flanking Amino Acid:
QDAQDGQGCTDVNECEMLSG
Intron Amino Acid Position:
872

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
62
0.3
1.4
71.9
41
Major PPT
83.2
0.75
0.7
76.3
32.3
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
52
0.04
1.5
59.2
40.3

Associated Gene:

Gene:
LTBP1
Ensembl Gene ID:
ENSAPLG00000012621
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034958
34673080 - 34805375
132296