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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34706657_34713934_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34706657 - 34713934
Intron Length:
7278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TGATGTTAAATT
Flanking Amino Acid:
SVSADGRTCEDVDECVNGTL
Intron Amino Acid Position:
830

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
73
33.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
92.1
0.95
0.6
88.1
21.8
Minor 5ss
25.8
-2.8
2.9
29.5
43.2
Minor BPS
49.1
0.01
2
68.89
42.7

Associated Gene:

Gene:
LTBP1
Ensembl Gene ID:
ENSAPLG00000012621
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034958
34673080 - 34805375
132296