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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34722862_34724947_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34722862 - 34724947
Intron Length:
2086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
GTTATATTATCA
Flanking Amino Acid:
KLSASEDQCEDIDECQHRSL
Intron Amino Acid Position:
761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66.4
45.1
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
85.8
0.81
0.8
80.4
31.7
Minor 5ss
31.5
-2.1
3.1
39.9
45.7
Minor BPS
49.7
-0
1.9
65.97
40

Associated Gene:

Gene:
LTBP1
Ensembl Gene ID:
ENSAPLG00000012621
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034958
34673080 - 34805375
132296
ENSAPLT00000013254
34673080 - 34805375
132296