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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34730190_34733720_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34730190 - 34733720
Intron Length:
3531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCATTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTCTTTTATC
Flanking Amino Acid:
YQMNRRGECEDIDECMTPTT
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.6
0.55
1
75.6
32
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
72.5
0.69
1.5
82.19
31.8

Associated Gene:

Gene:
LTBP1
Ensembl Gene ID:
ENSAPLG00000012621
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034958
34673080 - 34805375
132296
ENSAPLT00000013254
34673080 - 34805375
132296