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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34745440_34748209_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34745440 - 34748209
Intron Length:
2770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CCACCTCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TTCTCCTCCACC
Flanking Amino Acid:
HCEKCPLPGTAKEEPVEALT
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
69.9
0.45
0.8
60.8
34.9
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
60.4
0.31
2
74.59
42.4

Associated Gene:

Gene:
LTBP1
Ensembl Gene ID:
ENSAPLG00000012621
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034958
34673080 - 34805375
132296