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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34869294_34872686_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
34869294 - 34872686
Intron Length:
3393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAGCTTGC
5'SS Class:
weak_major
3'SS Sequence:
TCATATTGGGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTATTTCATA
Flanking Amino Acid:
ATGSQRCIKRDQERNCLFYA
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.7
0.04
1.3
48.7
43.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
52.7
0.06
1.2
56
43.3
Minor 5ss
46
-0.4
2.9
56.6
42.5
Minor BPS
52.4
0.07
1.9
67.44
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018058
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043809
34869200 - 34873349
4150