About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34872807_34872915_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
34872807 - 34872915
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCACCAGCT
5'SS Class:
weak_major
3'SS Sequence:
TCCCGGGGCTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGCTTTGCATCC
Flanking Amino Acid:
SSSAGLPLRNKGEPPPTLSP
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.2
0.2
1.3
63
40
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
43.8
-0.3
1.7
44.6
41.3
Minor 5ss
28.9
-2.4
4.5
47.7
42.5
Minor BPS
39.8
-0.7
2.2
50.06
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018058
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043809
34869200 - 34873349
4150