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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34942585_34943624_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34942585 - 34943624
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTACA
5'SS Class:
major
3'SS Sequence:
TTTGTTGTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
AAGTAGATAATT
Flanking Amino Acid:
FQRCVTLEPDNAEAWNNLST
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
75.4
33.8
Major BPS
79
0.72
1
80.3
31.7
Major PPT
81.5
0.71
0.9
77.2
37.1
Minor 5ss
44.5
-0.6
2.5
56.5
41
Minor BPS
43.3
-0.4
2.3
61.59
42.1

Associated Gene:

Gene:
TTC27
Ensembl Gene ID:
ENSAPLG00000013557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014214
34926101 - 35038932
112832