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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34955352_34957526_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34955352 - 34957526
Intron Length:
2175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATC
5'SS Class:
strong_major
3'SS Sequence:
CTTATCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AATTTCTTATCT
Flanking Amino Acid:
CQVPPRWAIQRQLASLLFEL
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
80.7
31.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.2
0.79
0.8
76.9
37.2
Minor 5ss
44.1
-0.6
2.8
60.5
44.2
Minor BPS
70.3
0.71
1.5
83.35
37.4

Associated Gene:

Gene:
TTC27
Ensembl Gene ID:
ENSAPLG00000013557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014214
34926101 - 35038932
112832