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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34957623_34979444_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34957623 - 34979444
Intron Length:
21822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTGCATTTACA
Flanking Amino Acid:
RMERAMKQTQALSDQFEDAN
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
83.5
0.75
0.8
76.9
36.3
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
58.7
0.27
2
76.76
39.9

Associated Gene:

Gene:
TTC27
Ensembl Gene ID:
ENSAPLG00000013557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014214
34926101 - 35038932
112832