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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35015948_35020067_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35015948 - 35020067
Intron Length:
4120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TACTTTGCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TGGTCACTAATA
Flanking Amino Acid:
DITKLQINLTGALGKRTRFQ
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
74.6
0.55
0.9
69.8
36.3
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
51.7
0.05
1.9
66.31
39.9

Associated Gene:

Gene:
TTC27
Ensembl Gene ID:
ENSAPLG00000013557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014214
34926101 - 35038932
112832