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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35020233_35020736_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35020233 - 35020736
Intron Length:
504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTTC
5'SS Class:
major
3'SS Sequence:
TCTTGGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GTATCCTGATAT
Flanking Amino Acid:
FTVAQTCIKQMAEAEAFFTG
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77.7
31.3
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
82.5
0.73
0.9
76.3
37.7
Minor 5ss
59
0.3
2.2
70
34.4
Minor BPS
52.7
0.16
1.8
72.55
43.3

Associated Gene:

Gene:
TTC27
Ensembl Gene ID:
ENSAPLG00000013557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014214
34926101 - 35038932
112832