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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35020840_35023626_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35020840 - 35023626
Intron Length:
2787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
TTCACTTGAACT
Flanking Amino Acid:
NSRHKLASLQTLPWWTLRCV
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
90.9
0.92
0.7
89.2
27.2
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
67.3
0.62
1.5
81.54
40

Associated Gene:

Gene:
TTC27
Ensembl Gene ID:
ENSAPLG00000013557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014214
34926101 - 35038932
112832