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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35023768_35030568_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
35023768 - 35030568
Intron Length:
6801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
CTTGTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTTCCTGAACA
Flanking Amino Acid:
PSALLQKFSEPKMLHAAILK
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87
0.83
0.7
84.6
30.3
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
79.7
0.93
1.3
85.68
32.9

Associated Gene:

Gene:
TTC27
Ensembl Gene ID:
ENSAPLG00000013557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014214
34926101 - 35038932
112832