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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35030699_35036315_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35030699 - 35036315
Intron Length:
5617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGAAATC
5'SS Class:
major
3'SS Sequence:
ATCTATATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTCCTTATCT
Flanking Amino Acid:
DCSAEVDNVERQRLMFLLGV
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1
68.3
36.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.1
0.61
0.9
70.5
39
Minor 5ss
30.5
-2.2
3.3
42.3
44.8
Minor BPS
85.6
1.19
1.4
100.1
28.3

Associated Gene:

Gene:
TTC27
Ensembl Gene ID:
ENSAPLG00000013557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014214
34926101 - 35038932
112832