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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35068385_35070691_R

Intron Information:

Intron Rank:
70
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35068385 - 35070691
Intron Length:
2307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCATCCTGAATC
Flanking Amino Acid:
IRNPSPCFKEVIHKHFYLKR
Intron Amino Acid Position:
4504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
92.5
0.96
0.6
88.3
21.4
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
68.9
0.57
1.4
72.2
39

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856