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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35078899_35079499_R

Intron Information:

Intron Rank:
67
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35078899 - 35079499
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGTTA
5'SS Class:
major
3'SS Sequence:
CTTACAATGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTTAAAA
Flanking Amino Acid:
CDEERLDIMKVLITGPADTP
Intron Amino Acid Position:
4361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
0.9
74.2
32
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
60.4
0.23
1
55.8
38.9
Minor 5ss
34.2
-1.8
3.4
46.2
49.1
Minor BPS
70.1
0.63
1.3
75.65
35.9

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856