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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35079718_35080901_R

Intron Information:

Intron Rank:
66
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35079718 - 35080901
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
TTTTCCTGATGC
Flanking Amino Acid:
YVAVMKKLQFDTFEMVSEDD
Intron Amino Acid Position:
4288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
88.5
0.87
0.7
80.8
31.2
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
57.3
0.21
2
75.27
41.2

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856