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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35081013_35081840_R

Intron Information:

Intron Rank:
65
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35081013 - 35081840
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCATATAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATATAACA
Flanking Amino Acid:
ATTSLRQANQEKKMAEYSKK
Intron Amino Acid Position:
4251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
71
35.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.3
0.57
1
70.7
38.4
Minor 5ss
36.6
-1.5
3.1
46.6
48.7
Minor BPS
57.8
0.24
1.8
75.12
35.5

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856